Stem-loop oni-mir-22c

Accession

MI0034658

Description

Oreochromis niloticus oni-mir-22c precursor miRNA

Literature search

1 open access papers mention oni-mir-22c
(1 sentences)

Sequence

2090364 reads, 1298.0 reads per million, 105 experiments

CGUUCUUCACUGGCUAGCUUUAugucccacgccccacacuaAAGCUGCCAGUUGAAGAGCUGU
.(((((((((((((.((((((((((..........))).)))))))))))).))))))))...

Structure

--C        -     U       -   ccca 
   GUUCUUCA CUGGC AGCUUUA ugu    c
   |||||||| ||||| ||||||| |||     
   CGAGAAGU GACCG UCGAAau aca    g
UGU        U     -       c   cccc 

Annotation confidence High

Genome context

CM001455.1: 15386361-15386423 [+]

Mature oni-miR-22c-5p

• Accession: MIMAT0059419
• Description: Oreochromis niloticus oni-miR-22c-5p mature miRNA
• Sequence: 1 - CGUUCUUCACUGGCUAGCUUUA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-22c-3p

• Accession: MIMAT0042735
• Description: Oreochromis niloticus oni-miR-22c-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGUUGAAGAGCUGU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774