Stem-loop oni-mir-15a

Accession

MI0034661

Description

Oreochromis niloticus oni-mir-15a precursor miRNA

Sequence

2762188 reads, 2471.0 reads per million, 107 experiments

UAGCAGCACGGAAUGGUUUGUGgguuauacugagaugCAGGCCAUACUGUGCUGCCGCA
..(((((((((.((((((((((..(((...)))..)))))))))).)))))))))....

Structure

--UA         A          gg   u 
    GCAGCACGG AUGGUUUGUG  uua  
    ||||||||| ||||||||||  ||| a
    CGUCGUGUC UACCGGACgu  agu  
ACGC         A          ag   c 

Annotation confidence High

Genome context

CM001459.1: 12108763-12108821 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-15a

Mature oni-miR-15a-5p

• Accession: MIMAT0042738
• Description: Oreochromis niloticus oni-miR-15a-5p mature miRNA
• Sequence: 1 - UAGCAGCACGGAAUGGUUUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-15a-3p

• Accession: MIMAT0059425
• Description: Oreochromis niloticus oni-miR-15a-3p mature miRNA
• Sequence: 38 - CAGGCCAUACUGUGCUGCCGCA - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774