Stem-loop oni-mir-132a

Accession

MI0034663

Description

Oreochromis niloticus oni-mir-132a precursor miRNA

Literature search

1 open access papers mention oni-mir-132a
(5 sentences)

Sequence

660276 reads, 411.0 reads per million, 110 experiments

ACCGUGGCAUUAGAUUGUUACUguaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure

-        AU            ----  a  a 
 ACCGUGGC  UAGAUUGUUACU    gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a 

Annotation confidence High

Genome context

CM001457.1: 21905355-21905416 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-132a

Mature oni-miR-132a-5p

• Accession: MIMAT0059427
• Description: Oreochromis niloticus oni-miR-132a-5p mature miRNA
• Sequence: 1 - ACCGUGGCAUUAGAUUGUUACU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-132a-3p

• Accession: MIMAT0042740
• Description: Oreochromis niloticus oni-miR-132a-3p mature miRNA
• Sequence: 42 - UAACAGUCUACAGCCAUGGUC - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774