Stem-loop oni-mir-139

Accession

MI0034667

Description

Oreochromis niloticus oni-mir-139 precursor miRNA

Literature search

1 open access papers mention oni-mir-139
(5 sentences)

Sequence

1555245 reads, 1165.0 reads per million, 106 experiments

UCUACAGUGCAUGUGUCUCCAGUauguuagugaugcuacUGGAGACCCAGCUCUGUUGGAAU
(((((((.((.((.((((((((((.((.......)))))))))))).)))).))).))))..

Structure

--    -   U  A  U          u  ua 
  UCUA CAG GC UG GUCUCCAGUa gu  g
  |||| ||| || || |||||||||| ||  u
  AGGU GUC CG AC CAGAGGUcau cg  g
UA    U   U  -  C          -  ua 

Annotation confidence High

Genome context

CM001457.1: 6751910-6751971 [-]

Mature oni-miR-139-5p

• Accession: MIMAT0042742
• Description: Oreochromis niloticus oni-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-139-3p

• Accession: MIMAT0059429
• Description: Oreochromis niloticus oni-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCAGCUCUGUUGGAAU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774