Stem-loop oni-mir-155

Accession

MI0034677

Description

Oreochromis niloticus oni-mir-155 precursor miRNA

Literature search

2 open access papers mention oni-mir-155
(3 sentences)

Sequence

153388 reads, 170.0 reads per million, 105 experiments

UUAAUGCUAAUCGUGAUAGGGGUuguucuuauuaacagaCACCUAACAUGUUAGCAUUAGCU
((((((((((.((((.(((((..((((......))))..).)))).))))))))))))))..

Structure

--          U    A    - GU    cu 
  UUAAUGCUAA CGUG UAGG G  uguu  u
  |||||||||| |||| |||| |  ||||   
  GAUUACGAUU GUAC AUCC C  acaa  a
UC          -    A    A ag    uu 

Annotation confidence High

Genome context

CM001444.1: 7366056-7366117 [+]

Mature oni-miR-155-5p

• Accession: MIMAT0042751
• Description: Oreochromis niloticus oni-miR-155-5p mature miRNA
• Sequence: 1 - UUAAUGCUAAUCGUGAUAGGGGU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-155-3p

• Accession: MIMAT0059438
• Description: Oreochromis niloticus oni-miR-155-3p mature miRNA
• Sequence: 40 - CACCUAACAUGUUAGCAUUAGCU - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774