Stem-loop oni-mir-730

Accession

MI0034680

Description

Oreochromis niloticus oni-mir-730 precursor miRNA

Literature search

1 open access papers mention oni-mir-730
(4 sentences)

Sequence

174495 reads, 137.0 reads per million, 100 experiments

UCCUCAUUGUGCAUGCUGUGUGuauuucuguguguaccaCACAGCGCCUGCAAUGUGGAGG
(((.((((((...((((((((((((........))).)))))))))...)))))).)))..

Structure

--   U      GCA         -   uuc 
  UCC CAUUGU   UGCUGUGUG uau   u
  ||| ||||||   ||||||||| |||    
  AGG GUAACG   GCGACACac aug   g
GG   U      UCC         c   ugu 

Annotation confidence High

Genome context

CM001459.1: 27249589-27249649 [+]

Mature oni-miR-730-5p

• Accession: MIMAT0042755
• Description: Oreochromis niloticus oni-miR-730-5p mature miRNA
• Sequence: 1 - UCCUCAUUGUGCAUGCUGUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-730-3p

• Accession: MIMAT0059439
• Description: Oreochromis niloticus oni-miR-730-3p mature miRNA
• Sequence: 40 - CACAGCGCCUGCAAUGUGGAGG - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774