Stem-loop oni-mir-729

Accession

MI0034684

Description

Oreochromis niloticus oni-mir-729 precursor miRNA

Sequence

390 reads, 3.0 reads per million, 28 experiments

gGGGCUGUAUCAUAACCAGGCUgugagcugcauggagCAUGGGUAUGAUACGACCUCA
((((.(((((((((.(((.((((((.....)))..))).))).))))))))).)))).

Structure

-    C         A   G   --   a 
 gGGG UGUAUCAUA CCA GCU  gug g
 |||| ||||||||| ||| |||  ||| c
 CUCC GCAUAGUAU GGU Cga  uac u
A    A         G   A   gg   g 

Annotation confidence High

Genome context

CM001460.1: 11754497-11754554 [+]

Mature oni-miR-729-5p

• Accession: MIMAT0042760
• Description: Oreochromis niloticus oni-miR-729-5p mature miRNA
• Sequence: 2 - GGGCUGUAUCAUAACCAGGCU - 22
• Evidence: experimental ; Illumina [2]

Mature oni-miR-729-3p

• Accession: MIMAT0042761
• Description: Oreochromis niloticus oni-miR-729-3p mature miRNA
• Sequence: 38 - CAUGGGUAUGAUACGACCUCA - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774