Stem-loop oni-mir-153b

Accession

MI0034685

Description

Oreochromis niloticus oni-mir-153b precursor miRNA

Literature search

1 open access papers mention oni-mir-153b
(4 sentences)

Sequence

181343 reads, 133.0 reads per million, 104 experiments

UCAUUCUUGUGGUUUGCAGCUaguagucuggguccagUUGCAUAGUCACAAAAAUGAUC
(((((.(((((((((((((((.(..........).))))))).)))))))).)))))..

Structure

--     C        -       a uagu 
  UCAUU UUGUGGUU UGCAGCU g    c
  ||||| |||||||| ||||||| |     
  AGUAA AACACUGA ACGUUga c    u
CU     A        U       c uggg 

Annotation confidence High

Genome context

GL831181.1: 522430-522488 [-]

Mature oni-miR-153b-5p

• Accession: MIMAT0059443
• Description: Oreochromis niloticus oni-miR-153b-5p mature miRNA
• Sequence: 1 - UCAUUCUUGUGGUUUGCAGCU - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-153b-3p

• Accession: MIMAT0042762
• Description: Oreochromis niloticus oni-miR-153b-3p mature miRNA
• Sequence: 38 - UUGCAUAGUCACAAAAAUGAUC - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774