Stem-loop oni-mir-193

Accession

MI0034686

Description

Oreochromis niloticus oni-mir-193 precursor miRNA

Sequence

189924 reads, 139.0 reads per million, 105 experiments

UGGGUCUUUGCGGGCAAGGUGAguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure

--    U     C    A  G     ccu 
  UGGG CUUUG GGGC AG UGAgu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu 

Annotation confidence High

Genome context

CM001449.1: 20416873-20416931 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-193

Mature oni-miR-193-5p

• Accession: MIMAT0059444
• Description: Oreochromis niloticus oni-miR-193-5p mature miRNA
• Sequence: 1 - UGGGUCUUUGCGGGCAAGGUGA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-193-3p

• Accession: MIMAT0042763
• Description: Oreochromis niloticus oni-miR-193-3p mature miRNA
• Sequence: 38 - AACUGGCCUACAAAGUCCCAGU - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774