Stem-loop oni-mir-138-3

Accession

MI0034692

Description

Oreochromis niloticus oni-mir-138-3 precursor miRNA

Literature search

1 open access papers mention oni-mir-138-3
(1 sentences)

Sequence

571746 reads, 394.0 reads per million, 103 experiments

AGCUGGUGUUGUGAAUCAGGCCGccacaguccagggaccgGCUACUUCCCAACACCAGGGUc
..(((((((((.(((...(((((((.(......)))..)))))..))).)))))))))....

Structure

--AG         U   UCA     --  a ag 
    CUGGUGUUG GAA   GGCCG  cc c  u
    ||||||||| |||   |||||  || |   
    GACCACAAC CUU   UCGgc  gg g  c
cUGG         C   -CA     ca  - ac 

Annotation confidence High

Genome context

CM001464.1: 25879223-25879284 [-]

Mature oni-miR-138-5p

• Accession: MIMAT0042714
• Description: Oreochromis niloticus oni-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-138-3-3p

• Accession: MIMAT0059388
• Description: Oreochromis niloticus oni-miR-138-3-3p mature miRNA
• Sequence: 41 - GCUACUUCCCAACACCAGGGU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774