Stem-loop oni-mir-218a-1

Accession

MI0034694

Description

Oreochromis niloticus oni-mir-218a-1 precursor miRNA

Literature search

1 open access papers mention oni-mir-218a-1
(4 sentences)

Sequence

1219298 reads, 914.0 reads per million, 105 experiments

UUGUGCUUGAUCUAACCAUGUGacugccagguuccuaucguggAACAUGGUUCUUUCAAGCACCAUg
..((((((((...((((((((..((((..(((....))))))).))))))))...))))))))....

Structure

--UU        UCU        Ga    ca   u 
    GUGCUUGA   AACCAUGU  cugc  ggu c
    ||||||||   ||||||||  ||||  |||  
    CACGAACU   UUGGUACA  ggug  cua c
gUAC        UUC        -A    --   u 

Annotation confidence High

Genome context

CM001449.1: 18443096-18443162 [-]

Mature oni-miR-218a-5p

• Accession: MIMAT0042679
• Description: Oreochromis niloticus oni-miR-218a-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-218a-1-3p

• Accession: MIMAT0059343
• Description: Oreochromis niloticus oni-miR-218a-1-3p mature miRNA
• Sequence: 44 - AACAUGGUUCUUUCAAGCACCAU - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774