Stem-loop oni-mir-103-1

Accession

MI0034704

Description

Oreochromis niloticus oni-mir-103-1 precursor miRNA

Sequence

4466880 reads, 3378.0 reads per million, 111 experiments

AGCCUCUUUACAGUGCUGCCUUGUcuaaucauguucaAGCAGCAUUGUACAGGGCUAUGA
((((.((.(((((((((((.(((............)))))))))))))).))))))....

Structure

----    U  U           C   Ucuaa 
    AGCC CU UACAGUGCUGC UUG     u
    |||| || ||||||||||| |||      
    UCGG GA AUGUUACGACG Aac     c
AGUA    -  C           -   uugua 

Annotation confidence High

Genome context

CM001445.1: 10282663-10282722 [+]

Mature oni-miR-103-1-5p

• Accession: MIMAT0059340
• Description: Oreochromis niloticus oni-miR-103-1-5p mature miRNA
• Sequence: 1 - AGCCUCUUUACAGUGCUGCCUUGU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-103-3p

• Accession: MIMAT0042677
• Description: Oreochromis niloticus oni-miR-103-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUGA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774