Stem-loop oni-mir-429b

Accession

MI0034709

Description

Oreochromis niloticus oni-mir-429b precursor miRNA

Literature search

1 open access papers mention oni-mir-429b
(1 sentences)

Sequence

831861 reads, 644.0 reads per million, 105 experiments

GUCUUACCAGACAUGGUUAGAUguaauuauuggugucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((............)))))))..)))))))))).))...

Structure

---  C          UG       guaau 
   GU UUACCAGACA  GUUAGAU     u
   || ||||||||||  |||||||      
   CG AAUGGUCUGU  UAAUcug     a
UGC  U          CA       ugguu 

Annotation confidence High

Genome context

GL831308.1: 161417-161475 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-429b

Mature oni-miR-429b-5p

• Accession: MIMAT0061083
• Description: Oreochromis niloticus oni-miR-429b-5p mature miRNA
• Sequence: 1 - GUCUUACCAGACAUGGUUAGAU - 22
• Evidence: experimental ; Illumina [1]

Mature oni-miR-429b-3p

• Accession: MIMAT0042772
• Description: Oreochromis niloticus oni-miR-429b-3p mature miRNA
• Sequence: 38 - UAAUACUGUCUGGUAAUGCCGU - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774