Stem-loop oni-mir-184a

Accession

MI0034711

Description

Oreochromis niloticus oni-mir-184a precursor miRNA

Sequence

1395194 reads, 2294.0 reads per million, 113 experiments

UUAUCACUUUUCCAGCCCAGCUauagauucuguauccguUGGACGGAGAACUGAUAAGGGC
((((((.((((((.(.((((((((((...)))))...))))).))))))).))))))....

Structure

----      C      A C     ---     a 
    UUAUCA UUUUCC G CCAGC   Uauag  
    |||||| |||||| | |||||   ||||| u
    AAUAGU AAGAGG C GGUug   auguc  
CGGG      C      - A     ccu     u 

Annotation confidence High

Genome context

CM001444.1: 18708277-18708337 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-184a

Mature oni-miR-184a-5p

• Accession: MIMAT0059460
• Description: Oreochromis niloticus oni-miR-184a-5p mature miRNA
• Sequence: 1 - UUAUCACUUUUCCAGCCCAGCU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-184a-3p

• Accession: MIMAT0042773
• Description: Oreochromis niloticus oni-miR-184a-3p mature miRNA
• Sequence: 40 - UGGACGGAGAACUGAUAAGGGC - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774