Stem-loop oni-mir-375

Accession

MI0034712

Description

Oreochromis niloticus oni-mir-375 precursor miRNA

Literature search

1 open access papers mention oni-mir-375
(8 sentences)

Sequence

1747552 reads, 1321.0 reads per million, 112 experiments

ACGUUGAGCCUCACGUACAAUACcugaagaugaaguUUUGUUCGUUCGGCUCGCGUUA
((((.(((((..(((.((((.((...........)).)))).)))..)))))))))..

Structure

--    U     UC   U    U  cuga 
  ACGU GAGCC  ACG ACAA AC    a
  |||| |||||  ||| |||| ||    g
  UGCG CUCGG  UGC UGUU ug    a
AU    -     CU   U    U  aagu 

Annotation confidence High

Genome context

CM001459.1: 29307469-29307526 [-]

Mature oni-miR-375-5p

• Accession: MIMAT0059461
• Description: Oreochromis niloticus oni-miR-375-5p mature miRNA
• Sequence: 1 - ACGUUGAGCCUCACGUACAAUAC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-375-3p

• Accession: MIMAT0042774
• Description: Oreochromis niloticus oni-miR-375-3p mature miRNA
• Sequence: 37 - UUUGUUCGUUCGGCUCGCGUUA - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774