Stem-loop oni-mir-10d

Accession

MI0034722

Description

Oreochromis niloticus oni-mir-10d precursor miRNA

Literature search

2 open access papers mention oni-mir-10d
(12 sentences)

Sequence

1053733 reads, 3227.0 reads per million, 106 experiments

ACCCUGUAGAUCCGAAUUUGUGuaaauacagcagcagccaCAAAUUCGCAUCUUGGGGAGU
.(((((.((((.((((((((((........((....)))))))))))).)))))))))...

Structure

--A     U    C          uaaauaca  a 
   CCCUG AGAU CGAAUUUGUG        gc g
   ||||| |||| ||||||||||        ||  
   GGGGU UCUA GCUUAAACac        cg c
UGA     -    C          --------  a 

Annotation confidence High

Genome context

CM001451.1: 25799055-25799115 [+]

Mature oni-miR-10d-5p

• Accession: MIMAT0042776
• Description: Oreochromis niloticus oni-miR-10d-5p mature miRNA
• Sequence: 1 - ACCCUGUAGAUCCGAAUUUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10d-3p

• Accession: MIMAT0059467
• Description: Oreochromis niloticus oni-miR-10d-3p mature miRNA
• Sequence: 41 - CAAAUUCGCAUCUUGGGGAGU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774