Stem-loop oni-mir-181a

Accession

MI0034726

Description

Oreochromis niloticus oni-mir-181a precursor miRNA

Literature search

6 open access papers mention oni-mir-181a
(27 sentences)

Sequence

228936 reads, 273.0 reads per million, 105 experiments

CACAUUCAUCGCUGUCGGUGGGuuaguaauggcauaaacUCGCCGGGCGAUGAAUGACAAc
..(((((((((((..(((((((((.((....))...)))))))))))))))))))).....

Structure

---CA           GU         --a  a 
     CAUUCAUCGCU  CGGUGGGuu   gu a
     |||||||||||  |||||||||   ||  
     GUAAGUAGCGG  GCCGCUcaa   cg u
cAACA           --         aua  g 

Annotation confidence High

Genome context

CM001447.1: 13318671-13318731 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-181a

Mature oni-miR-181a-5p

• Accession: MIMAT0042779
• Description: Oreochromis niloticus oni-miR-181a-5p mature miRNA
• Sequence: 1 - CACAUUCAUCGCUGUCGGUGGG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-181a-3p

• Accession: MIMAT0059470
• Description: Oreochromis niloticus oni-miR-181a-3p mature miRNA
• Sequence: 40 - UCGCCGGGCGAUGAAUGACAA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774