Stem-loop oni-mir-725

Accession

MI0034727

Description

Oreochromis niloticus oni-mir-725 precursor miRNA

Literature search

2 open access papers mention oni-mir-725
(7 sentences)

Sequence

660905 reads, 793.0 reads per million, 109 experiments

AGCUGGAAACUUUGCCUGGGAAUUucugugcucaaaaauUUCAGUCAUUGUUUCUGGUCGU
.(((((((((..((.((((.(((((.((....)).))))))))).))..)))))))))...

Structure

--A         UU  C    G     c  u 
   GCUGGAAAC  UG CUGG AAUUu ug g
   |||||||||  || |||| ||||| ||  
   UGGUCUUUG  AC GACU Uuaaa ac c
UGC         UU  U    -     a  u 

Annotation confidence High

Genome context

CM001465.1: 20354859-20354919 [+]

Mature oni-miR-725-5p

• Accession: MIMAT0059471
• Description: Oreochromis niloticus oni-miR-725-5p mature miRNA
• Sequence: 1 - AGCUGGAAACUUUGCCUGGGAAUU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-725-3p

• Accession: MIMAT0042780
• Description: Oreochromis niloticus oni-miR-725-3p mature miRNA
• Sequence: 40 - UUCAGUCAUUGUUUCUGGUCGU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774