Stem-loop oni-mir-458

Accession

MI0034732

Description

Oreochromis niloticus oni-mir-458 precursor miRNA

Sequence

234639 reads, 225.0 reads per million, 107 experiments

AGCGCCAUUUUCAGAGCUAUAagagugaaaguuaucAUAGCUCUUUAAAUGGUACUGC
((.(((((((..((((((((..((..........))))))))))..))))))).))..

Structure

--  C       UC        Aa  guga 
  AG GCCAUUU  AGAGCUAU  ga    a
  || |||||||  ||||||||  ||     
  UC UGGUAAA  UCUCGAUA  cu    a
CG  A       UU        --  auug 

Annotation confidence High

Genome context

CM001445.1: 268936-268993 [-]

Mature oni-miR-458-5p

• Accession: MIMAT0059475
• Description: Oreochromis niloticus oni-miR-458-5p mature miRNA
• Sequence: 1 - AGCGCCAUUUUCAGAGCUAUA - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-458-3p

• Accession: MIMAT0042786
• Description: Oreochromis niloticus oni-miR-458-3p mature miRNA
• Sequence: 37 - AUAGCUCUUUAAAUGGUACUGC - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774