Stem-loop oni-mir-150

Accession

MI0034733

Description

Oreochromis niloticus oni-mir-150 precursor miRNA

Literature search

1 open access papers mention oni-mir-150
(1 sentences)

Sequence

3552064 reads, 3790.0 reads per million, 106 experiments

ACUCCCAAUCCUUGUACCAGUGUcuugacaccagugaCGCUGGACAGGUUUUGGGGGGG
.(((((((..(((((.(((((((((((....))).)))))))))))))..)))))))..

Structure

-A       UC     A        -   a 
  CUCCCAA  CUUGU CCAGUGUc uug c
  |||||||  ||||| |||||||| |||  
  GGGGGUU  GGACA GGUCGCag gac a
GG       UU     -        u   c 

Annotation confidence High

Genome context

GL831541.1: 143888-143946 [-]

Mature oni-miR-150-5p

• Accession: MIMAT0042787
• Description: Oreochromis niloticus oni-miR-150-5p mature miRNA
• Sequence: 1 - ACUCCCAAUCCUUGUACCAGUGU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-150-3p

• Accession: MIMAT0059476
• Description: Oreochromis niloticus oni-miR-150-3p mature miRNA
• Sequence: 38 - CGCUGGACAGGUUUUGGGGGGG - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774