Stem-loop oni-mir-137b-1

Accession

MI0034740

Description

Oreochromis niloticus oni-mir-137b-1 precursor miRNA

Sequence

954728 reads, 678.0 reads per million, 105 experiments

ACGGGUAUUCUUGGGUUGAUAauacagauguggaugUUAUUGCUUGAGAAUACGCGUAG
(((.(((((((((((((((((.(((....)))..)))))..)))))))))))).)))..

Structure

--   G            --     -a   a 
  ACG GUAUUCUUGGGU  UGAUA  uac g
  ||| ||||||||||||  |||||  |||  
  UGC CAUAAGAGUUCG  AUUgu  gug a
GA   G            UU     ag   u 

Annotation confidence High

Genome context

CM001449.1: 20129494-20129552 [-]

Mature oni-miR-137b-5p

• Accession: MIMAT0059482
• Description: Oreochromis niloticus oni-miR-137b-5p mature miRNA
• Sequence: 1 - ACGGGUAUUCUUGGGUUGAUA - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-137b-3p

• Accession: MIMAT0042795
• Description: Oreochromis niloticus oni-miR-137b-3p mature miRNA
• Sequence: 37 - UUAUUGCUUGAGAAUACGCGUAG - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774