Stem-loop oni-mir-135d

Accession

MI0034745

Description

Oreochromis niloticus oni-mir-135d precursor miRNA

Sequence

528623 reads, 461.0 reads per million, 105 experiments

UAUGGCUUUUUAUUCCUACGUGAugguagauggguucAUGUAGGAGUAGAAGCCACU
..((((((((.((((((((((((............))))))))))))))))))))..

Structure

UA        U            uggua 
  UGGCUUUU AUUCCUACGUGA     g
  |||||||| ||||||||||||      
  ACCGAAGA UGAGGAUGUAcu     a
UC        -            ugggu 

Annotation confidence High

Genome context

CM001460.1: 23680841-23680897 [-]

Mature oni-miR-135d-5p

• Accession: MIMAT0042798
• Description: Oreochromis niloticus oni-miR-135d-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUACGUGA - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-135d-3p

• Accession: MIMAT0059486
• Description: Oreochromis niloticus oni-miR-135d-3p mature miRNA
• Sequence: 38 - AUGUAGGAGUAGAAGCCACU - 57
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774