Stem-loop oni-mir-18b

Accession

MI0034746

Description

Oreochromis niloticus oni-mir-18b precursor miRNA

Sequence

77754 reads, 85.0 reads per million, 105 experiments

UAAGGUGCAUCUAGUGUAGUUagugaaguauucaaagucuACUGCCCUAGUUGCCCCUUCUGU
.((((.(((.((((.(((((...((((...))))......))))).)))).))).))))....

Structure

---U    U   U    U     ---Uag    g 
    AAGG GCA CUAG GUAGU      ugaa  
    |||| ||| |||| |||||      |||| u
    UUCC CGU GAUC CGUCA      acuu  
UGUC    C   U    C     ucugaa    a 

Annotation confidence High

Genome context

CM001449.1: 27554497-27554559 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-18b

Mature oni-miR-18b-5p

• Accession: MIMAT0042799
• Description: Oreochromis niloticus oni-miR-18b-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGUAGUU - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-18b-3p

• Accession: MIMAT0059487
• Description: Oreochromis niloticus oni-miR-18b-3p mature miRNA
• Sequence: 41 - ACUGCCCUAGUUGCCCCUUCUGU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774