Stem-loop oni-mir-147

Accession

MI0034748

Description

Oreochromis niloticus oni-mir-147 precursor miRNA

Sequence

29551 reads, 34.0 reads per million, 103 experiments

ACAGAAUCGUUUCUGCACAAACUaggacacuuugacacucaGUGUGCGGAAAUGCUUCUGCUC
.(((((.((((((((((((....((............))...)))))))))))).)))))...

Structure

--A     U            AACU  gacac 
   CAGAA CGUUUCUGCACA    ag     u
   ||||| ||||||||||||    ||      
   GUCUU GUAAAGGCGUGU    uc     u
CUC     C            -Gac  acagu 

Annotation confidence High

Genome context

CM001444.1: 3671514-3671576 [-]

Mature oni-miR-147-5p

• Accession: MIMAT0059489
• Description: Oreochromis niloticus oni-miR-147-5p mature miRNA
• Sequence: 1 - ACAGAAUCGUUUCUGCACAAACU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-147-3p

• Accession: MIMAT0042801
• Description: Oreochromis niloticus oni-miR-147-3p mature miRNA
• Sequence: 42 - GUGUGCGGAAAUGCUUCUGCUC - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774