Stem-loop oni-mir-2187b

Accession

MI0034749

Description

Oreochromis niloticus oni-mir-2187b precursor miRNA

Sequence

6953 reads, 9.0 reads per million, 87 experiments

UUUAAUUAGUACAGCCUGUAUUaguaaugucaucuauucUUUACAGGCUAUGCUAAUCUaug
....(((((((.((((((((..((.((((.....)))))).)))))))).))))))).....

Structure

-UUUA       C        UU  u    u 
     AUUAGUA AGCCUGUA  ag aaug c
     ||||||| ||||||||  || |||| a
     UAAUCGU UCGGACAU  Uc uuau u
guaUC       A        -U  -    c 

Annotation confidence Medium

Genome context

CM001451.1: 2028260-2028321 [+]

Mature oni-miR-2187b-5p

• Accession: MIMAT0042802
• Description: Oreochromis niloticus oni-miR-2187b-5p mature miRNA
• Sequence: 1 - UUUAAUUAGUACAGCCUGUAUU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-2187b-3p

• Accession: MIMAT0059490
• Description: Oreochromis niloticus oni-miR-2187b-3p mature miRNA
• Sequence: 40 - UUUACAGGCUAUGCUAAUCU - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774