Stem-loop oni-mir-457

Accession

MI0034751

Description

Oreochromis niloticus oni-mir-457 precursor miRNA

Sequence

1044223 reads, 1035.0 reads per million, 105 experiments

UAGCAGCACAUCAUUACUGGUAuuucuuuucacugcauuaCCAGUAUGUUAUGUGCUGCUUCA
.((((((((((...((((((((...(........)...))))))))....))))))))))...

Structure

--U          -CAU        uuu uuu 
   AGCAGCACAU    UACUGGUA   c   u
   ||||||||||    ||||||||   |    
   UCGUCGUGUA    AUGACCau   g   c
ACU          UUGU        uac uca 

Annotation confidence High

Genome context

CM001446.1: 926096-926158 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-457

Mature oni-miR-457-5p

• Accession: MIMAT0042804
• Description: Oreochromis niloticus oni-miR-457-5p mature miRNA
• Sequence: 1 - UAGCAGCACAUCAUUACUGGUA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-457-3p

• Accession: MIMAT0059492
• Description: Oreochromis niloticus oni-miR-457-3p mature miRNA
• Sequence: 41 - CCAGUAUGUUAUGUGCUGCUUCA - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774