Stem-loop oni-mir-301a

Accession

MI0034752

Description

Oreochromis niloticus oni-mir-301a precursor miRNA

Sequence

458580 reads, 437.0 reads per million, 104 experiments

GCUCUGACUUCAUUGCACUACUguaucagacaacuagUAGUGCAAUAGUAUUGUCAAAGC
(((.((((..((((((((((((((........)).))))))))))).)....)))).)))

Structure

   C    --UU -           -  auc 
GCU UGAC    C AUUGCACUACU gu   a
||| ||||    | ||||||||||| ||    
CGA ACUG    G UAACGUGAUga ca   g
   A    UUAU A           u  aca 

Annotation confidence High

Genome context

GL831852.1: 60554-60613 [-]

Mature oni-miR-301a-5p

• Accession: MIMAT0059493
• Description: Oreochromis niloticus oni-miR-301a-5p mature miRNA
• Sequence: 1 - GCUCUGACUUCAUUGCACUACU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-301a-3p

• Accession: MIMAT0042805
• Description: Oreochromis niloticus oni-miR-301a-3p mature miRNA
• Sequence: 38 - UAGUGCAAUAGUAUUGUCAAAGC - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774