Stem-loop oni-mir-551

Accession

MI0034753

Description

Oreochromis niloticus oni-mir-551 precursor miRNA

Sequence

724690 reads, 474.0 reads per million, 102 experiments

GAAACCAAGUGUGGGUGUGGCCUgaaaaagaaauaggGCGACCCAUCCUUUGUUUCUG
(((((.(((.((((((.((.((((.........)))).)))))))).))).)))))..

Structure

--     C   U      G  G    aaa 
  GAAAC AAG GUGGGU UG CCUg   a
  ||||| ||| |||||| || ||||   a
  CUUUG UUC UACCCA GC ggau   g
GU     U   C      -  G    aaa 

Annotation confidence High

Genome context

CM001457.1: 7953435-7953492 [+]

Mature oni-miR-551-5p

• Accession: MIMAT0059494
• Description: Oreochromis niloticus oni-miR-551-5p mature miRNA
• Sequence: 1 - GAAACCAAGUGUGGGUGUGGCCU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-551-3p

• Accession: MIMAT0042806
• Description: Oreochromis niloticus oni-miR-551-3p mature miRNA
• Sequence: 38 - GCGACCCAUCCUUUGUUUCUG - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774