Stem-loop oni-mir-726

Accession

MI0034754

Description

Oreochromis niloticus oni-mir-726 precursor miRNA

Literature search

1 open access papers mention oni-mir-726
(6 sentences)

Sequence

56013 reads, 187.0 reads per million, 58 experiments

AUUCCGCUAGUUCUGAACUAUUcguguuugucaaaagUUCACUACUAGCAGAACUCAGA
.(((.((((((..((((((................))))))..)))))).)))......

Structure

-----A   C      UC      AUUcgug 
      UUC GCUAGU  UGAACU       u
      ||| ||||||  ||||||        
      AAG CGAUCA  ACUUga       u
AGACUC   A      UC      aaacugu 

Annotation confidence Medium

Genome context

CM001448.1: 9850577-9850635 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-726

Mature oni-miR-726-5p

• Accession: MIMAT0059495
• Description: Oreochromis niloticus oni-miR-726-5p mature miRNA
• Sequence: 1 - AUUCCGCUAGUUCUGAACUAUU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-726-3p

• Accession: MIMAT0042807
• Description: Oreochromis niloticus oni-miR-726-3p mature miRNA
• Sequence: 38 - UUCACUACUAGCAGAACUCAGA - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774