Stem-loop oni-mir-212a

Accession

MI0034757

Description

Oreochromis niloticus oni-mir-212a precursor miRNA

Literature search

1 open access papers mention oni-mir-212a
(11 sentences)

Sequence

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUgac    aug   c
UC  U     C       -      ----   aaa 

Annotation confidence Not enough data

Genome context

GL831384.1: 414694-414760 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from oni-mir-212a

Mature oni-miR-212a-5p

• Accession: MIMAT0042810
• Description: Oreochromis niloticus oni-miR-212a-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-212a-3p

• Accession: MIMAT0042811
• Description: Oreochromis niloticus oni-miR-212a-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774