Stem-loop oni-mir-33a

Accession

MI0034762

Description

Oreochromis niloticus oni-mir-33a precursor miRNA

Literature search

2 open access papers mention oni-mir-33a
(5 sentences)

Sequence

GUGCAUUGUAGUUGCAUUGCAugauccugaagccgagugCAAUGUGUCUGCAGUGCAGUA
.((((((((((..(((((((((..((........)))))))))))..))))))))))...

Structure

--G          UU         ga  cug 
   UGCAUUGUAG  GCAUUGCAu  uc   a
   ||||||||||  |||||||||  ||    
   ACGUGACGUC  UGUAACgug  ag   a
AUG          UG         --  ccg 

Annotation confidence Not enough data

Genome context

CM001447.1: 7668169-7668228 [+]

Mature oni-miR-33a-5p

• Accession: MIMAT0042819
• Description: Oreochromis niloticus oni-miR-33a-5p mature miRNA
• Sequence: 1 - GUGCAUUGUAGUUGCAUUGCA - 21
• Evidence: experimental ; Illumina [2]

Mature oni-miR-33a-3p

• Accession: MIMAT0042820
• Description: Oreochromis niloticus oni-miR-33a-3p mature miRNA
• Sequence: 40 - CAAUGUGUCUGCAGUGCAGUA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774