Stem-loop oni-mir-15c

Accession

MI0034767

Description

Oreochromis niloticus oni-mir-15c precursor miRNA

Sequence

uagcagcauaucauguuuugcagaugugcugaaucgcuuCAAAUCAUUAUGUGCUGCCACU
..(((((((((.(((.((((.((.((........)))).)))).))).)))))))))....

Structure

--ua         c   u    c  a  ugc 
    gcagcauau aug uuug ag ug   u
    ||||||||| ||| |||| || ||    
    CGUCGUGUA UAC AAAC uc gc   g
UCAC         U   U    u  -  uaa 

Annotation confidence Not enough data

Genome context

CM001446.1: 924982-925042 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-15c

Mature oni-miR-15c

• Accession: MIMAT0042828
• Description: Oreochromis niloticus oni-miR-15c mature miRNA
• Sequence: 40 - CAAAUCAUUAUGUGCUGCCACU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774