Stem-loop oni-mir-8160a

Accession

MI0034771

Description

Oreochromis niloticus oni-mir-8160a precursor miRNA

Sequence

66331 reads, 59.0 reads per million, 98 experiments

AGAAUAAUGCCAGCAGUCGGCCgugaacucagugucaggCCAGUGCUGGUGUUAUUGAGA
..(((((((((((((.(.((((.(((........)))))))).)))))))))))))....

Structure

--AG             G C    g   acu 
    AAUAAUGCCAGCA U GGCC uga   c
    ||||||||||||| | |||| |||    
    UUAUUGUGGUCGU A CCgg acu   a
AGAG             G -    -   gug 

Annotation confidence High

Genome context

CM001448.1: 2011825-2011884 [+]

Mature oni-miR-8160a-5p

• Accession: MIMAT0042833
• Description: Oreochromis niloticus oni-miR-8160a-5p mature miRNA
• Sequence: 1 - AGAAUAAUGCCAGCAGUCGGCC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-8160a-3p

• Accession: MIMAT0059503
• Description: Oreochromis niloticus oni-miR-8160a-3p mature miRNA
• Sequence: 40 - CCAGUGCUGGUGUUAUUGAGA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774