Stem-loop oni-mir-8159

Accession

MI0034774

Description

Oreochromis niloticus oni-mir-8159 precursor miRNA

Sequence

2987247 reads, 4861.0 reads per million, 105 experiments

UCAGUAACUGGAAUCUGUCCCUGCaugguaaaagugugcAGGGCCUGGCUGGUUACUGCAC
.((((((((((.....(.(((((((((.......))))))))).)...))))))))))...

Structure

--U          AAUCU U         gu 
   CAGUAACUGG     G CCCUGCaug  a
   ||||||||||     | |||||||||  a
   GUCAUUGGUC     C GGGAcgugu  a
CAC          --GGU C         ga 

Annotation confidence High

Genome context

CM001453.1: 9497705-9497765 [+]

Mature oni-miR-8159-5p

• Accession: MIMAT0042837
• Description: Oreochromis niloticus oni-miR-8159-5p mature miRNA
• Sequence: 1 - UCAGUAACUGGAAUCUGUCCCUGC - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-8159-3p

• Accession: MIMAT0059506
• Description: Oreochromis niloticus oni-miR-8159-3p mature miRNA
• Sequence: 40 - AGGGCCUGGCUGGUUACUGCAC - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774