Stem-loop oni-mir-10553

Accession

MI0034776

Description

Oreochromis niloticus oni-mir-10553 precursor miRNA

Sequence

479233 reads, 623.0 reads per million, 105 experiments

GUGCCAUAUCUGACUGUACGCAauuguauuauucuauUGCGUUAUCAGCGAUAUAGCAaug
.(((.(((((.(.(((.(((((((.(.......).)))))))...))))))))).)))...

Structure

--G   C     U A   --U       u ua 
   UGC AUAUC G CUG   ACGCAau g  u
   ||| ||||| | |||   ||||||| |  u
   ACG UAUAG C GAC   UGCGUua c  a
gua   A     - -   UAU       u uu 

Annotation confidence Medium

Genome context

GL831414.1: 209594-209654 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10553

Mature oni-miR-10553-5p

• Accession: MIMAT0042839
• Description: Oreochromis niloticus oni-miR-10553-5p mature miRNA
• Sequence: 1 - GUGCCAUAUCUGACUGUACGCA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10553-3p

• Accession: MIMAT0059508
• Description: Oreochromis niloticus oni-miR-10553-3p mature miRNA
• Sequence: 38 - UGCGUUAUCAGCGAUAUAGCA - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774