Stem-loop oni-mir-10573b

Accession

MI0034780

Description

Oreochromis niloticus oni-mir-10573b precursor miRNA

Sequence

187193 reads, 126.0 reads per million, 107 experiments

AACUCCAGUCCUCGAGGGCAUGgaaaaguugcaugacaccGGCCUUCGAGGAAUGGAGUUU
(((((((.(((((((((((.(((....(((....))).)))))))))))))).))))))).

Structure

-       G           A   aaaa   g 
 AACUCCA UCCUCGAGGGC UGg    guu c
 ||||||| ||||||||||| |||    |||  
 UUGAGGU AGGAGCUUCCG Gcc    cag a
U       A           -   ---a   u 

Annotation confidence High

Genome context

AERX01077620.2: 273-333 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10573b

Mature oni-miR-10573b-5p

• Accession: MIMAT0042842
• Description: Oreochromis niloticus oni-miR-10573b-5p mature miRNA
• Sequence: 1 - AACUCCAGUCCUCGAGGGCAUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10573b-3p

• Accession: MIMAT0059511
• Description: Oreochromis niloticus oni-miR-10573b-3p mature miRNA
• Sequence: 41 - GGCCUUCGAGGAAUGGAGUUU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774