Stem-loop oni-mir-7147

Accession

MI0034783

Description

Oreochromis niloticus oni-mir-7147 precursor miRNA

Sequence

209285 reads, 136.0 reads per million, 104 experiments

UGUACCAUGCUGGUAGCCAGUGugugguaggcuuugcUGGUGACCAGCGUUGUGCCUCa
.((((.((((((((.(((((((.((.....))..))))))).)))))))).))))....

Structure

---U    C        A       -u  g 
    GUAC AUGCUGGU GCCAGUG  gu g
    |||| |||||||| |||||||  || u
    CGUG UGCGACCA UGGUcgu  cg a
aCUC    U        G       uu  g 

Annotation confidence High

Genome context

CM001452.1: 14868007-14868065 [-]

Mature oni-miR-7147-5p

• Accession: MIMAT0042845
• Description: Oreochromis niloticus oni-miR-7147-5p mature miRNA
• Sequence: 1 - UGUACCAUGCUGGUAGCCAGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-7147-3p

• Accession: MIMAT0059514
• Description: Oreochromis niloticus oni-miR-7147-3p mature miRNA
• Sequence: 38 - UGGUGACCAGCGUUGUGCCUC - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774