Stem-loop oni-mir-10578

Accession

MI0034784

Description

Oreochromis niloticus oni-mir-10578 precursor miRNA

Sequence

1568 reads, 3.0 reads per million, 56 experiments

UGCAGUGAGUCAGUCUGAAGCUgucugacuguaucagCUGACAGAUGGCUCUCUGAAGU
..(((.((((((.((((.(((((...........)))))..)))))))))).)))....

Structure

--UG   U      G    -A     ucug 
    CAG GAGUCA UCUG  AGCUg    a
    ||| |||||| ||||  |||||    c
    GUC CUCGGU AGAC  UCgac    u
UGAA   U      -    AG     uaug 

Annotation confidence High

Genome context

CM001463.1: 31197043-31197101 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-10578

Mature oni-miR-10578-5p

• Accession: MIMAT0042846
• Description: Oreochromis niloticus oni-miR-10578-5p mature miRNA
• Sequence: 1 - UGCAGUGAGUCAGUCUGAAGCU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10578-3p

• Accession: MIMAT0059515
• Description: Oreochromis niloticus oni-miR-10578-3p mature miRNA
• Sequence: 38 - CUGACAGAUGGCUCUCUGAAGU - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774