Stem-loop oni-mir-10551

Accession

MI0034787

Description

Oreochromis niloticus oni-mir-10551 precursor miRNA

Sequence

8390 reads, 8.0 reads per million, 94 experiments

AGGAAAUCUGCUUCUGUUGGUUUgguauuacuaaaaaAUCACAGGAGCAGAGUUUUUCc
.((((((((((((((((.(((((............))))))))))))))))...)))))

Structure

A     ---           U     gguau 
 GGAAA   UCUGCUUCUGU GGUUU     u
 |||||   ||||||||||| |||||      
 cCUUU   AGACGAGGACA CUAaa     a
-     UUG           -     aaauc 

Annotation confidence Medium

Genome context

CM001461.1: 14979855-14979913 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-10551

Mature oni-miR-10551-5p

• Accession: MIMAT0042849
• Description: Oreochromis niloticus oni-miR-10551-5p mature miRNA
• Sequence: 1 - AGGAAAUCUGCUUCUGUUGGUUU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10551-3p

• Accession: MIMAT0059517
• Description: Oreochromis niloticus oni-miR-10551-3p mature miRNA
• Sequence: 38 - AUCACAGGAGCAGAGUUUUUC - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774