Stem-loop oni-mir-10545

Accession

MI0034788

Description

Oreochromis niloticus oni-mir-10545 precursor miRNA

Sequence

42094 reads, 44.0 reads per million, 106 experiments

UAAGUCUCACACCAGUGCAAAACaaaaaucaugacgcUGCUCAGGUGUGGGACCAUA
...((((((((((.(.(((..................))).).))))))))))....

Structure

-UAA          A U   AAACaaaa 
    GUCUCACACC G GCA        a
    |||||||||| | |||         
    CAGGGUGUGG C CGU        u
AUAC          A U   cgcaguac 

Annotation confidence High

Genome context

CM001462.1: 5316559-5316615 [-]

Mature oni-miR-10545-5p

• Accession: MIMAT0042850
• Description: Oreochromis niloticus oni-miR-10545-5p mature miRNA
• Sequence: 1 - UAAGUCUCACACCAGUGCAAAAC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10545-3p

• Accession: MIMAT0059518
• Description: Oreochromis niloticus oni-miR-10545-3p mature miRNA
• Sequence: 38 - UGCUCAGGUGUGGGACCAUA - 57
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774