miRBase entry: bta-mir-101-1

Stem-loop bta-mir-101-1


Accession
MI0009721
Description
Bos taurus bta-mir-101-1 precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
13 open access papers mention bta-mir-101-1
(33 sentences)

Sequence

111025 reads, 1082 reads per million, 76 experiments
aggcugcccuggcucaguuaucacagugcugaugcuguccauucuaaaggUACAGUACUGUGAUAACUGAAggauggcagcca
.(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....))))))).

Structure
a       cuggc                  a    gucca 
 ggcugcc     ucaguuaucacagugcug ugcu     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uaggA                  -    aaauc 


Annotation confidence High
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Genome context
chr3: 80980185-80980267 [+]

Database links

Mature bta-miR-101

Accession MIMAT0003520
Description Bos taurus bta-miR-101 mature miRNA
Sequence 51 - UACAGUACUGUGAUAACUGAA - 71
Evidence experimental
cloned [2]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125