Stem-loop sequence bta-mir-101-1

Accession

MI0009721 (change log)

Description

Bos taurus miR-101-1 stem-loop

Gene family

MIPF0000046; mir-101

Literature search

13 open access papers mention bta-mir-101-1
(33 sentences)

Stem-loop

   a       cuggc                  a    gucca 
5'  ggcugcc     ucaguuaucacagugcug ugcu     u
    |||||||     |||||||||||||||||| ||||      
3'  ccgacgg     agucaauagugucaugac augg     u
   a       uagga                  -    aaauc 

Deep sequencing

213967 reads, 1.76e+03 reads per million, 78 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr3: 80980185-80980267 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR101-1
• RNAcentral:URS0000759A58_9913
• miRBase Tracker:MI0009721

Mature sequence bta-miR-101

• Accession: MIMAT0003520
• Sequence: 51 - uacaguacugugauaacugaa - 71
• Deep sequencing: 426357 reads, 78 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-101

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).