Search results

mir-6 family in Rfam (RF00143)

Summary
This family consists of the microRNA (miRNA) precursor mir-6 which appears to be Drosophila specific. Animal miRNAs are transcribed as ~70nt precursors and subsequently processed by the Dicer enzyme to give a ~22nt product. In this case the mature sequence comes from the 3' arm of the precursor. The extents of the hairpin precursors are not generally known and are estimated based on hairpin prediction. The products are thought to have regulatory roles through complementarity to mRNA. The involvement of Dicer in miRNA processing suggests a relationship with the phenomenon of RNA interference. miRNAs are numbered based on the sequence of the mature RNA.
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5'

There are 39 hairpins in the mir-6 family

Name Accession RPM Chromosome Start End Strand Confidence
dme-mir-6-1 MI0000124 1126 chr2R 19661003 19661084 - High
dme-mir-6-2 MI0000125 1086 chr2R 19660869 19660942 - High
dme-mir-6-3 MI0000126 1200 chr2R 19660716 19660795 - High
dps-mir-6-1 MI0001299 - 3 12677098 12677177 - -
dps-mir-6-3 MI0001300 - 3 12676804 12676883 - -
dps-mir-6-2 MI0001301 - 3 12676947 12677029 - -
dan-mir-6-1 MI0008999 - scaffold_13266 9731820 9731887 + -
dan-mir-6-3 MI0009010 - scaffold_13266 9732122 9732197 + -
dan-mir-6-2 MI0009015 - scaffold_13266 9731963 9732046 + -
der-mir-6-3 MI0009042 - scaffold_4845 9748475 9748554 - -
der-mir-6-2 MI0009048 - scaffold_4845 9748628 9748700 - -
der-mir-6-1 MI0009051 - scaffold_4845 9748765 9748835 - -
dgr-mir-6-2 MI0009111 - scaffold_15112 2108086 2108164 - -
dgr-mir-6-4 MI0009114 - scaffold_5621 3398 3467 + -
dgr-mir-6-6 MI0009130 - scaffold_5621 3701 3774 + -
dgr-mir-6-1 MI0009139 - scaffold_15112 2108232 2108301 - -
dgr-mir-6-5 MI0009148 - scaffold_5621 3535 3613 + -
dgr-mir-6-3 MI0009158 - scaffold_15112 2107923 2107996 - -
dmo-mir-6-1 MI0009189 - scaffold_6496 20936315 20936380 - -
dmo-mir-6-3 MI0009226 - scaffold_6496 20935959 20936036 - -
dmo-mir-6-2 MI0009232 - scaffold_6496 20936137 20936217 - -
dpe-mir-6-3 MI0009261 - scaffold_2 8906643 8906725 + -
dpe-mir-6-1 MI0009317 - scaffold_2 8906500 8906568 + -
dpe-mir-6-2 MI0009322 - scaffold_2 8906789 8906868 + -
dse-mir-6-1 MI0009327 - scaffold_1 13063246 13063316 - -
dse-mir-6-2 MI0009403 - scaffold_1 13063107 13063180 - -
dse-mir-6-3 MI0009404 - scaffold_1 13062954 13063033 - -
dsi-mir-6-1 MI0009452 - chr2R 14253951 14254021 - -
dsi-mir-6-3 MI0009467 - chr2R 14253656 14253735 - -
dsi-mir-6-2 MI0009473 - chr2R 14253809 14253882 - -
dvi-mir-6-2 MI0009490 - scaffold_12875 4112784 4112863 + -
dvi-mir-6-3 MI0009511 - scaffold_12875 4112960 4113032 + -
dvi-mir-6-1 MI0009537 - scaffold_12875 4112632 4112701 + -
dwi-mir-6-3 MI0009588 - scf2_1100000004514 1651001 1651076 - -
dwi-mir-6-2 MI0009609 - scf2_1100000004514 1651147 1651240 - -
dwi-mir-6-1 MI0009611 - scf2_1100000004514 1651330 1651398 - -
dya-mir-6-3 MI0009650 - chr2R 13624489 13624568 + -
dya-mir-6-1 MI0009671 - chr2R 13624206 13624276 + -
dya-mir-6-2 MI0009694 - chr2R 13624342 13624415 + -



Comments or questions? Email mirbase@manchester.ac.uk