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| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| dme-mir-3 | MI0000121 | 3394 | chr2R | 19661595 | 19661663 | - | High |
| dme-mir-309 | MI0000421 | 2231 | chr2R | 19661706 | 19661774 | - | High |
| dps-mir-3 | MI0001295 | - | 3 | 12677755 | 12677827 | - | - |
| dps-mir-309 | MI0001354 | - | 3 | 12677889 | 12677956 | - | - |
| dan-mir-3 | MI0008960 | - | scaffold_13266 | 9731226 | 9731298 | + | - |
| dan-mir-309 | MI0008990 | - | scaffold_13266 | 9731113 | 9731180 | + | - |
| der-mir-309 | MI0009026 | - | scaffold_4845 | 9749455 | 9749523 | - | - |
| der-mir-3 | MI0009079 | - | scaffold_4845 | 9749344 | 9749412 | - | - |
| dgr-mir-309-1 | MI0009118 | - | scaffold_15112 | 2109142 | 2109217 | - | - |
| dgr-mir-3-1 | MI0009120 | - | scaffold_15112 | 2109014 | 2109079 | - | - |
| dgr-mir-3-2 | MI0009127 | - | scaffold_5621 | 2663 | 2728 | + | - |
| dgr-mir-309-2 | MI0009142 | - | scaffold_5621 | 2525 | 2600 | + | - |
| dmo-mir-309 | MI0009213 | - | scaffold_6496 | 20937119 | 20937193 | - | - |
| dmo-mir-3 | MI0009221 | - | scaffold_6496 | 20936993 | 20937057 | - | - |
| dpe-mir-3 | MI0009253 | - | scaffold_2 | 8905839 | 8905911 | + | - |
| dpe-mir-309 | MI0009320 | - | scaffold_2 | 8905710 | 8905777 | + | - |
| dse-mir-309 | MI0009366 | - | scaffold_1 | 13063938 | 13064006 | - | - |
| dse-mir-3 | MI0009399 | - | scaffold_1 | 13063827 | 13063895 | - | - |
| dsi-mir-3 | MI0009427 | - | chr2R | 14254533 | 14254601 | - | - |
| dsi-mir-309 | MI0009461 | - | chr2R | 14254644 | 14254712 | - | - |
| dvi-mir-3 | MI0009525 | - | scaffold_12875 | 4111962 | 4112026 | + | - |
| dvi-mir-309 | MI0009526 | - | scaffold_12875 | 4111809 | 4111882 | + | - |
| dwi-mir-3 | MI0009618 | - | scf2_1100000004514 | 1651934 | 1652011 | - | - |
| dya-mir-3 | MI0009646 | - | chr2R | 13623621 | 13623689 | + | - |
| dya-mir-309 | MI0009657 | - | chr2R | 13623507 | 13623575 | + | - |
| aga-mir-309 | MI0010607 | - | chr3R | 43008711 | 43008784 | - | - |
| aae-mir-309a-1 | MI0013477 | 0 | supercont1.150 | 907874 | 907965 | + | - |
| aae-mir-309a-2 | MI0013478 | 0 | supercont1.602 | 94025 | 94115 | + | - |
| aae-mir-309b | MI0013526 | 1 | supercont1.464 | 825629 | 825699 | + | - |
| cqu-mir-309 | MI0013631 | - | supercont3.145 | 66026 | 66116 | - | - |