Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood |
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PubMed ID | 20459673 |
Authors | Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A |
Journal | BMC Genomics |
Volume | 11 |
Pages | 288 |
Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
---|---|---|---|---|---|---|---|
hsa-mir-3667 | MI0016068 | 33 | chr22 | 49543393 | 49543466 | - | - |
hsa-mir-3668 | MI0016069 | 0 | chr6 | 140205252 | 140205326 | + | - |
hsa-mir-3670-1 | MI0016071 | 1 | chr16 | 14907717 | 14907781 | + | - |
hsa-mir-3671 | MI0016072 | 0 | chr1 | 65057755 | 65057842 | - | - |
hsa-mir-3672 | MI0016073 | 2 | chrX | 121370972 | 121371053 | + | - |
hsa-mir-3674 | MI0016075 | 1 | chr8 | 1801125 | 1801192 | + | - |
hsa-mir-3675 | MI0016076 | 2 | chr1 | 16858949 | 16859021 | - | - |
hsa-mir-3677 | MI0016078 | 27 | chr16 | 2270713 | 2270772 | + | High |
hsa-mir-3678 | MI0016079 | 12 | chr17 | 75406069 | 75406162 | + | - |
hsa-mir-3679 | MI0016080 | 18 | chr2 | 134127125 | 134127192 | + | - |
hsa-mir-3680-1 | MI0016081 | 27 | chr16 | 21506049 | 21506135 | - | - |
hsa-mir-3681 | MI0016082 | 2 | chr2 | 12199130 | 12199201 | + | - |
hsa-mir-3682 | MI0016083 | 9 | chr2 | 53849122 | 53849205 | - | - |
hsa-mir-3683 | MI0016084 | 0 | chr7 | 7066964 | 7067045 | - | - |
hsa-mir-3684 | MI0016085 | 8 | chr4 | 98997387 | 98997460 | + | - |
hsa-mir-3685 | MI0016086 | 5 | chr12 | 95309923 | 95309984 | + | - |
hsa-mir-3686 | MI0016087 | 0 | chr8 | 129484057 | 129484142 | - | - |
hsa-mir-3687-1 | MI0016088 | None | None | None | - | ||
hsa-mir-3688-1 | MI0016089 | 1524 | chr4 | 159128802 | 159128894 | - | High |
hsa-mir-3689a | MI0016090 | 7 | chr9 | 134849487 | 134849564 | - | - |
hsa-mir-3690-1 | MI0016091 | 19 | chrX | 1293918 | 1293992 | + | - |
hsa-mir-3691 | MI0016092 | 51 | chr6 | 5148233 | 5148322 | - | - |
hsa-mir-3692 | MI0016093 | 6 | chr6 | 157529132 | 157529200 | + | - |
hsa-mir-3670-2 | MI0019112 | 1 | chr16 | 16306370 | 16306434 | + | - |
hsa-mir-3680-2 | MI0019113 | 27 | chr16 | 29599179 | 29599265 | - | - |
hsa-mir-3690-2 | MI0023561 | 19 | chrY | 1293918 | 1293992 | + | - |
hsa-mir-3670-3 | MI0031513 | 1 | chr16 | 18405698 | 18405762 | - | - |
hsa-mir-3670-4 | MI0031514 | 1 | chr16 | 18488301 | 18488365 | - | - |
hsa-mir-3687-2 | MI0031515 | None | None | None | - | ||
hsa-mir-3676 | MI0016077 | 754 | None | None | - | ||
hsa-mir-3669 | MI0016070 | 1 | None | None | - | ||
hsa-mir-3673 | MI0016074 | 1 | None | None | - | ||
hsa-let-7a-1 | MI0000060 | 46519 | chr9 | 94175957 | 94176036 | + | High |
hsa-let-7a-2 | MI0000061 | 46265 | chr11 | 122146522 | 122146593 | - | High |
hsa-let-7a-3 | MI0000062 | 46706 | chr22 | 46112749 | 46112822 | + | High |
hsa-let-7b | MI0000063 | 27396 | chr22 | 46113686 | 46113768 | + | High |
hsa-let-7c | MI0000064 | 15711 | chr21 | 16539828 | 16539911 | + | High |
hsa-let-7d | MI0000065 | 4366 | chr9 | 94178834 | 94178920 | + | High |
hsa-let-7e | MI0000066 | 5118 | chr19 | 51692786 | 51692864 | + | High |
hsa-let-7f-1 | MI0000067 | 65280 | chr9 | 94176347 | 94176433 | + | High |
hsa-let-7f-2 | MI0000068 | 65395 | chrX | 53557192 | 53557274 | - | High |
hsa-mir-15a | MI0000069 | 3371 | chr13 | 50049119 | 50049201 | - | High |
hsa-mir-16-1 | MI0000070 | 10398 | chr13 | 50048973 | 50049061 | - | High |
hsa-mir-17 | MI0000071 | 12840 | chr13 | 91350605 | 91350688 | + | High |
hsa-mir-21 | MI0000077 | 28570 | chr17 | 59841266 | 59841337 | + | High |
hsa-mir-22 | MI0000078 | 2726 | chr17 | 1713903 | 1713987 | - | High |
hsa-mir-24-1 | MI0000080 | 2988 | chr9 | 95086021 | 95086088 | + | High |
hsa-mir-24-2 | MI0000081 | 3119 | chr19 | 13836287 | 13836359 | - | High |
hsa-mir-25 | MI0000082 | 3994 | chr7 | 100093560 | 100093643 | - | High |
hsa-mir-27a | MI0000085 | 3484 | chr19 | 13836440 | 13836517 | - | High |
hsa-mir-92a-1 | MI0000093 | 7474 | chr13 | 91351314 | 91351391 | + | High |
hsa-mir-101-1 | MI0000103 | 3806 | chr1 | 65058434 | 65058508 | - | High |
hsa-mir-106a | MI0000113 | 2817 | chrX | 134170198 | 134170278 | - | High |
hsa-mir-16-2 | MI0000115 | 10575 | chr3 | 160404745 | 160404825 | + | High |
hsa-mir-192 | MI0000234 | 1383 | chr11 | 64891137 | 64891246 | - | High |
hsa-mir-196a-1 | MI0000238 | 1109 | chr17 | 48632490 | 48632559 | - | High |
hsa-mir-34a | MI0000268 | 442 | chr1 | 9151668 | 9151777 | - | High |
hsa-mir-181a-2 | MI0000269 | 4211 | chr9 | 124692442 | 124692551 | + | High |
hsa-mir-196a-2 | MI0000279 | 1227 | chr12 | 53991738 | 53991847 | + | High |
hsa-mir-199b | MI0000282 | 9807 | chr9 | 128244721 | 128244830 | - | High |
hsa-mir-210 | MI0000286 | 423 | chr11 | 568089 | 568198 | - | High |
hsa-mir-181a-1 | MI0000289 | 4186 | chr1 | 198859044 | 198859153 | - | High |
hsa-mir-219a-1 | MI0000296 | 64 | chr6 | 33207835 | 33207944 | + | High |
hsa-mir-223 | MI0000300 | 1820 | chrX | 66018870 | 66018979 | + | High |
hsa-mir-200b | MI0000342 | 1272 | chr1 | 1167104 | 1167198 | + | - |
hsa-let-7g | MI0000433 | 6904 | chr3 | 52268278 | 52268361 | - | High |
hsa-let-7i | MI0000434 | 7403 | chr12 | 62603686 | 62603769 | + | High |
hsa-mir-1-2 | MI0000437 | 5211 | chr18 | 21829004 | 21829088 | - | High |
hsa-mir-27b | MI0000440 | 4618 | chr9 | 95085445 | 95085541 | + | High |
hsa-mir-133a-1 | MI0000450 | 680 | chr18 | 21825698 | 21825785 | - | High |
hsa-mir-133a-2 | MI0000451 | 684 | chr20 | 62564912 | 62565013 | + | High |
hsa-mir-142 | MI0000458 | 4761 | chr17 | 58331232 | 58331318 | - | High |
hsa-mir-145 | MI0000461 | 20797 | chr5 | 149430646 | 149430733 | + | High |
hsa-mir-9-1 | MI0000466 | 2789 | chr1 | 156420341 | 156420429 | - | High |
hsa-mir-9-2 | MI0000467 | 2776 | chr5 | 88666853 | 88666939 | - | High |
hsa-mir-9-3 | MI0000468 | 2765 | chr15 | 89368017 | 89368106 | + | High |
hsa-mir-134 | MI0000474 | 491 | chr14 | 101054687 | 101054759 | + | High |
hsa-mir-200c | MI0000650 | 2318 | chr12 | 6963699 | 6963766 | + | High |
hsa-mir-1-1 | MI0000651 | 5442 | chr20 | 62554306 | 62554376 | + | High |
hsa-mir-106b | MI0000734 | 2518 | chr7 | 100093993 | 100094074 | - | High |
hsa-mir-200a | MI0000737 | 1523 | chr1 | 1167863 | 1167952 | + | High |
hsa-mir-101-2 | MI0000739 | 3835 | chr9 | 4850297 | 4850375 | + | High |
hsa-mir-219a-2 | MI0000740 | 3045 | chr9 | 128392618 | 128392714 | - | High |
hsa-mir-34b | MI0000742 | 437 | chr11 | 111512938 | 111513021 | + | High |
hsa-mir-34c | MI0000743 | 1301 | chr11 | 111513439 | 111513515 | + | High |
hsa-mir-99b | MI0000746 | 1445 | chr19 | 51692612 | 51692681 | + | High |
hsa-mir-374a | MI0000782 | 1036 | chrX | 74287286 | 74287357 | - | High |
hsa-mir-342 | MI0000805 | 887 | chr14 | 100109655 | 100109753 | + | High |
hsa-mir-151a | MI0000809 | 3662 | chr8 | 140732564 | 140732653 | - | - |
hsa-mir-133b | MI0000822 | 266 | chr6 | 52148923 | 52149041 | + | - |
hsa-mir-196b | MI0001150 | 1494 | chr7 | 27169480 | 27169563 | - | High |
hsa-mir-486-1 | MI0002470 | 1411 | chr8 | 41660441 | 41660508 | - | High |
hsa-mir-504 | MI0003189 | 32 | chrX | 138667711 | 138667793 | - | High |
hsa-mir-532 | MI0003205 | 406 | chrX | 50003148 | 50003238 | + | High |
hsa-mir-618 | MI0003632 | 62 | chr12 | 80935736 | 80935833 | - | - |
hsa-mir-548e | MI0006344 | 151 | chr10 | 110988926 | 110989013 | + | High |
hsa-mir-151b | MI0003772 | 878 | chr14 | 100109419 | 100109514 | - | - |
hsa-mir-219b | MI0017299 | 21 | chr9 | 128392621 | 128392708 | + | High |
hsa-mir-486-2 | MI0023622 | 1403 | chr8 | 41660444 | 41660507 | + | High |