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Substantial loss of conserved and gain of novel MicroRNA families in flatworms |
|
|---|---|
| PubMed ID | 24025793 |
| Authors | "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L" |
| Journal | "Mol Biol Evol |
| Volume | 30 |
| Pages | 2619-2628 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| gsa-mir-1 | MI0028939 | None | None | None | - | ||
| gsa-mir-87 | MI0028940 | None | None | None | - | ||
| gsa-mir-279 | MI0028941 | None | None | None | - | ||
| gsa-mir-71a | MI0028942 | None | None | None | - | ||
| gsa-mir-184a | MI0028943 | None | None | None | - | ||
| gsa-mir-71b | MI0028944 | None | None | None | - | ||
| gsa-mir-190 | MI0028945 | None | None | None | - | ||
| gsa-mir-1175 | MI0028946 | None | None | None | - | ||
| gsa-mir-96a | MI0028947 | None | None | None | - | ||
| gsa-mir-36 | MI0028948 | None | None | None | - | ||
| gsa-let-7 | MI0028949 | None | None | None | - | ||
| gsa-mir-67 | MI0028950 | None | None | None | - | ||
| gsa-mir-219 | MI0028951 | None | None | None | - | ||
| gsa-mir-2a | MI0028952 | None | None | None | - | ||
| gsa-mir-281 | MI0028953 | None | None | None | - | ||
| gsa-mir-96b | MI0028954 | None | None | None | - | ||
| gsa-mir-2b | MI0028955 | None | None | None | - | ||
| gsa-mir-124a | MI0028956 | None | None | None | - | ||
| gsa-mir-2c | MI0028957 | None | None | None | - | ||
| gsa-mir-10a | MI0028958 | None | None | None | - | ||
| gsa-mir-2001 | MI0028959 | None | None | None | - | ||
| gsa-mir-7 | MI0028960 | None | None | None | - | ||
| gsa-mir-8 | MI0028961 | None | None | None | - | ||
| gsa-mir-76a | MI0028962 | None | None | None | - | ||
| gsa-mir-9 | MI0028963 | None | None | None | - | ||
| gsa-bantam | MI0028964 | None | None | None | - | ||
| gsa-mir-124b | MI0028965 | None | None | None | - | ||
| gsa-mir-278 | MI0028966 | None | None | None | - | ||
| gsa-mir-277a | MI0028967 | None | None | None | - | ||
| gsa-mir-2d | MI0028968 | None | None | None | - | ||
| gsa-mir-1993 | MI0028969 | None | None | None | - | ||
| gsa-mir-184b | MI0028970 | None | None | None | - | ||
| gsa-mir-993 | MI0028971 | None | None | None | - | ||
| gsa-lin-4 | MI0028972 | None | None | None | - | ||
| gsa-mir-10b | MI0028973 | None | None | None | - | ||
| gsa-mir-277b | MI0028974 | None | None | None | - | ||
| gsa-mir-1992 | MI0028975 | None | None | None | - | ||
| gsa-mir-31 | MI0028976 | None | None | None | - | ||
| gsa-mir-153 | MI0028977 | None | None | None | - | ||
| gsa-mir-9389 | MI0028978 | None | None | None | - | ||
| gsa-mir-71c | MI0028979 | None | None | None | - | ||
| gsa-mir-9390 | MI0028980 | None | None | None | - | ||
| gsa-mir-184c | MI0028981 | None | None | None | - | ||
| gsa-mir-9391 | MI0028982 | None | None | None | - | ||
| gsa-mir-9392 | MI0028983 | None | None | None | - | ||
| gsa-mir-9393 | MI0028984 | None | None | None | - | ||
| gsa-mir-9394a | MI0028985 | None | None | None | - | ||
| gsa-mir-76b | MI0028986 | None | None | None | - | ||
| gsa-mir-9395 | MI0028987 | None | None | None | - | ||
| gsa-mir-9396 | MI0028988 | None | None | None | - | ||
| gsa-mir-9397 | MI0028989 | None | None | None | - | ||
| gsa-mir-9398 | MI0028990 | None | None | None | - | ||
| gsa-mir-9399 | MI0028991 | None | None | None | - | ||
| gsa-mir-9400 | MI0028992 | None | None | None | - | ||
| gsa-mir-9394b | MI0028993 | None | None | None | - | ||
| gsa-mir-9401 | MI0028994 | None | None | None | - | ||
| gsa-mir-9402 | MI0028995 | None | None | None | - | ||
| gsa-mir-9403 | MI0028996 | None | None | None | - | ||
| gsa-mir-9404 | MI0028997 | None | None | None | - | ||
| gsa-mir-9405 | MI0028998 | None | None | None | - | ||
| sme-mir-184 | MI0005163 | None | gb|NNSW01000012.1| | 7152785 | 7152874 | - | High |
| sme-mir-2163 | MI0010797 | None | gb|NNSW01000652.1| | 28783 | 28888 | + | High |
| sme-mir-748 | MI0005174 | None | gb|NNSW01000155.1| | 107003 | 107081 | - | High |
| sme-mir-2164 | MI0010800 | None | gb|NNSW01001036.1| | 51679 | 51774 | + | High |
| sme-mir-756 | MI0005182 | None | gb|NNSW01000125.1| | 1007308 | 1007402 | + | High |
| sme-mir-1993 | MI0010781 | None | gb|NNSW01000027.1| | 2971584 | 2971685 | + | Medium |
| sme-mir-2162 | MI0010796 | None | gb|NNSW01000017.1| | 2221541 | 2221636 | + | High |
| sme-mir-92 | MI0005156 | None | gb|NNSW01000068.1| | 526525 | 526608 | - | High |
| sme-mir-315 | MI0010828 | None | gb|NNSW01000017.1| | 5952869 | 5952972 | - | High |
| sme-mir-12 | MI0005141 | None | gb|NNSW01000015.1| | 155728 | 155831 | - | High |
| sme-mir-216 | MI0010785 | None | gb|NNSW01000085.1| | 414232 | 414334 | + | High |
| sme-mir-750 | MI0005176 | None | gb|NNSW01000064.1| | 240572 | 240676 | - | High |
| sme-mir-1992 | MI0010783 | None | gb|NNSW01000030.1| | 1784489 | 1784580 | + | Medium |
| sme-mir-278 | MI0005171 | None | gb|NNSW01000106.1| | 1244675 | 1244772 | + | High |
| sme-mir-281 | MI0005172 | None | gb|NNSW01001460.1| | 7289 | 7384 | + | High |
| sme-mir-76 | MI0010935 | None | gb|NNSW01000640.1| | 75826 | 75911 | + | - |
| sme-mir-1175 | MI0010789 | None | gb|NNSW01000008.1| | 4209489 | 4209587 | + | High |
| sme-mir-67 | MI0005173 | None | gb|NNSW01000109.1| | 927805 | 927882 | + | High |
| sme-mir-71b | MI0005151 | None | gb|NNSW01000131.1| | 1191173 | 1191272 | + | High |
| sme-mir-2b | MI0005133 | None | gb|NNSW01000014.1| | 3096414 | 3096490 | + | High |
| sme-mir-752 | MI0005178 | None | gb|NNSW01000131.1| | 1191395 | 1191508 | + | High |
| emu-mir-87 | MI0017807 | None | scaffold_007780 | 2330314 | 2330405 | - | - |
| emu-mir-1 | MI0017798 | None | scaffold_007760 | 1198289 | 1198355 | + | - |
| emu-mir-9 | MI0017804 | None | scaffold_007780 | 8993270 | 8993362 | + | - |
| emu-mir-184 | MI0017817 | None | contig_62302 | 3441643 | 3441724 | - | - |
| emu-mir-153 | MI0017812 | None | scaffold_007712 | 285013 | 285100 | + | - |
| emu-mir-190 | MI0017813 | None | scaffold_007767 | 617222 | 617300 | + | - |
| emu-mir-2162 | MI0033534 | None | contig_62136 | 2544190 | 2544246 | + | - |
| emu-mir-61 | MI0033529 | None | scaffold_007780 | 6291387 | 6291461 | - | - |
| emu-mir-133 | MI0033530 | None | scaffold_007760 | 1210020 | 1210083 | + | - |
| emu-mir-4989 | MI0017818 | None | scaffold_007768 | 4972095 | 4972174 | - | - |
| emu-bantam | MI0033525 | None | contig_62302 | 143186 | 143260 | + | - |
| emu-mir-31 | MI0033526 | None | contig_60709 | 36639 | 36700 | + | - |
| emu-mir-1992 | MI0033533 | None | scaffold_007003 | 2075078 | 2075144 | + | - |
| emu-mir-281 | MI0033531 | None | scaffold_007768 | 11092479 | 11092530 | - | - |
| emu-mir-96 | MI0017808 | None | contig_62142 | 412521 | 412614 | + | - |
| emu-mir-10 | MI0017805 | None | scaffold_007768 | 7241879 | 7241956 | - | - |
| emu-mir-71 | MI0017806 | None | scaffold_007728 | 10027494 | 10027579 | - | - |
| emu-mir-2a | MI0017799 | None | scaffold_007760 | 1900654 | 1900737 | + | - |
| emu-mir-2b | MI0017800 | None | scaffold_007728 | 10027294 | 10027369 | - | - |
| fhe-mir-87 | MI0037122 | None | scaffold925 | 73140 | 73193 | - | - |
| fhe-mir-1 | MI0037101 | None | scaffold1477 | 206575 | 206656 | - | - |
| fhe-mir-9 | MI0037114 | None | scaffold943 | 103465 | 103602 | + | - |
| fhe-mir-190 | MI0037103 | None | scaffold149 | 97920 | 98012 | - | - |
| fhe-mir-2162 | MI0037132 | None | scaffold453 | 53682 | 53735 | + | - |
| fhe-mir-61 | MI0037102 | None | scaffold1123 | 381790 | 381927 | + | - |
| fhe-mir-277 | MI0037127 | None | scaffold2714 | 111146 | 111229 | - | - |
| fhe-bantam | MI0037100 | None | scaffold2423 | 167396 | 167495 | + | - |
| fhe-mir-31 | MI0037116 | None | scaffold2741 | 181657 | 181718 | + | - |
| fhe-mir-750 | MI0037106 | None | scaffold789 | 128884 | 128996 | + | - |
| fhe-mir-96 | MI0037123 | None | scaffold1609 | 165277 | 165331 | - | - |
| fhe-mir-10 | MI0037115 | None | scaffold95 | 429336 | 429391 | + | - |
| fhe-mir-124 | MI0037124 | None | scaffold3329 | 101586 | 101649 | - | - |
| fhe-mir-2a | MI0037107 | None | scaffold879 | 28178 | 28232 | + | - |
| fhe-mir-71b | MI0037121 | None | scaffold278 | 635977 | 636066 | + | - |
| fhe-mir-71a | MI0037120 | None | scaffold879 | 28077 | 28139 | + | - |
| fhe-mir-2b | MI0037108 | None | scaffold879 | 28276 | 28327 | + | - |
| egr-mir-87 | MI0017784 | None | APAU02000009.1 | 962338 | 962429 | - | High |
| egr-mir-1 | MI0017775 | None | APAU02000107.1 | 117513 | 117579 | + | - |
| egr-mir-9 | MI0017781 | None | APAU02000235.1 | 50908 | 51000 | + | High |
| egr-mir-184 | MI0017793 | None | APAU02000032.1 | 644065 | 644146 | + | High |
| egr-mir-153 | MI0017788 | None | APAU02000047.1 | 276191 | 276278 | - | High |
| egr-mir-190 | MI0017789 | None | APAU02000055.1 | 250953 | 251031 | - | High |
| egr-mir-2162 | MI0033107 | None | APAU02000040.1 | 661467 | 661534 | + | High |
| egr-mir-61 | MI0033104 | None | APAU02000003.1 | 1828873 | 1828958 | + | High |
| egr-mir-133 | MI0033114 | None | APAU02000107.1 | 129469 | 129541 | + | High |
| egr-mir-4989 | MI0017794 | None | APAU02000001.1 | 2377189 | 2377268 | + | High |
| egr-bantam | MI0033103 | None | APAU02000171.1 | 120982 | 121066 | - | High |
| egr-mir-31 | MI0033105 | None | APAU02000211.1 | 49499 | 49569 | - | Medium |
| egr-mir-1992 | MI0033115 | None | APAU02000092.1 | 131559 | 131636 | + | High |
| egr-mir-281 | MI0033110 | None | APAU02000006.1 | 1258746 | 1258814 | - | High |
| egr-mir-96 | MI0035040 | None | APAU02000054.1 | 418200 | 418297 | + | High |
| egr-mir-71 | MI0017783 | None | APAU02000027.1 | 925546 | 925631 | + | High |
| egr-mir-2a | MI0017776 | None | APAU02000019.1 | 574317 | 574400 | + | High |
| egr-mir-2b | MI0017777 | None | APAU02000027.1 | 925755 | 925830 | + | High |
| sja-mir-36 | MI0015289 | None | CABF01004852.1 | 272 | 364 | - | - |
| sja-mir-1 | MI0015282 | None | CABF01001061.1 | 9 | 93 | + | - |
| sja-mir-190 | MI0015294 | None | CABF01003857.1 | 2236 | 2358 | + | - |
| sja-mir-2162 | MI0015299 | None | CABF01030669.1 | 1637 | 1711 | - | - |
| sja-mir-61 | MI0015290 | None | CABF01036171.1 | 1214 | 1356 | + | - |
| sja-mir-310 | MI0015298 | None | CABF01020650.1 | 1788 | 1929 | - | - |
| sja-mir-133 | MI0015293 | None | CABF01070535.1 | 1141 | 1282 | + | - |
| sja-mir-277 | MI0015296 | None | None | None | - | ||
| sja-bantam | MI0010670 | None | None | None | - | ||
| sja-mir-31 | MI0015288 | None | CABF01027063.1 | 2598 | 2680 | - | - |
| sja-mir-10 | MI0015287 | None | CABF01007487.1 | 6178 | 6256 | + | - |
| sja-mir-124 | MI0015292 | None | CABF01021699.1 | 6318 | 6413 | + | - |
| sja-mir-2a | MI0015283 | None | CABF01007682.1 | 2964 | 3041 | - | - |
| sja-mir-71b | MI0015291 | None | CABF01011791.1 | 2817 | 2909 | + | - |
| sja-mir-71a | MI0010669 | None | CABF01007682.1 | 3056 | 3135 | - | - |
| sja-mir-2b | MI0015284 | None | CABF01007682.1 | 2869 | 2946 | - | - |
| sma-mir-190 | MI0021819 | None | 1 | 52387504 | 52387624 | - | High |
| sma-mir-2162 | MI0027274 | None | PAR2 | 27549504 | 27549650 | - | High |
| sma-mir-61 | MI0021829 | None | 1 | 84593789 | 84593886 | + | High |
| sma-bantam | MI0010675 | None | 6 | 13296239 | 13296310 | - | High |
| sma-mir-31 | MI0021825 | None | 6 | 3356527 | 3356609 | - | - |
| sma-mir-281 | MI0027237 | None | 2 | 8365766 | 8365924 | + | High |
| sma-mir-96 | MI0027259 | None | Z | 15420151 | 15420212 | - | High |
| sma-mir-10 | MI0021817 | None | 4 | 33574376 | 33574454 | + | High |
| sma-mir-2a | MI0021820 | None | PAR1 | 4544050 | 4544127 | + | High |
| sma-mir-71b | MI0021830 | None | 5 | 9679739 | 9679830 | + | High |
| sma-mir-71a | MI0010674 | None | PAR1 | 4543955 | 4544036 | + | High |
| sma-mir-2b | MI0021821 | None | PAR1 | 4544145 | 4544223 | + | High |
| cel-mir-36 | MI0000007 | 4419 | chrII | 11537713 | 11537809 | + | High |
| cel-mir-87 | MI0000058 | 946 | chrV | 12038688 | 12038781 | - | High |
| cel-mir-1 | MI0000003 | 57505 | chrI | 6172662 | 6172757 | - | High |
| cel-mir-61 | MI0000032 | 1161 | chrV | 11770060 | 11770156 | - | High |
| cel-mir-34 | MI0000005 | 2563 | chrX | 2969752 | 2969848 | - | High |
| cel-mir-252 | MI0000328 | 448 | chrII | 11446863 | 11446960 | - | High |
| cel-mir-242 | MI0000318 | 30 | chrIV | 4274247 | 4274342 | + | High |
| cel-mir-76 | MI0000047 | 38 | chrIII | 3142045 | 3142141 | + | High |
| cel-mir-67 | MI0000038 | 1225 | chrIII | 5931349 | 5931447 | - | High |
| cel-mir-124 | MI0000302 | 561 | chrIV | 11871738 | 11871833 | + | High |
| cel-mir-2 | MI0000004 | 1579 | chrI | 9372768 | 9372865 | - | High |
| cel-mir-71 | MI0000042 | 39340 | chrI | 9379927 | 9380020 | - | High |
| cte-mir-36 | MI0012116 | None | KB297234.1 | 701715 | 701805 | - | - |
| cte-mir-1 | MI0010046 | None | KB301107.1 | 105938 | 106031 | - | - |
| cte-mir-9 | MI0010052 | None | KB300095.1 | 129658 | 129758 | + | - |
| cte-mir-153 | MI0010072 | None | KB297741.1 | 539872 | 539972 | - | - |
| cte-mir-1989 | MI0010233 | None | KB292298.1 | 265958 | 266022 | - | - |
| cte-mir-190 | MI0010076 | None | KB301807.1 | 208565 | 208665 | + | - |
| cte-mir-1993 | MI0010230 | None | KB306857.1 | 174505 | 174575 | + | - |
| cte-mir-279 | MI0010083 | None | KB297234.1 | 703501 | 703601 | - | - |
| cte-mir-133 | MI0010070 | None | KB301107.1 | 99075 | 99175 | - | - |
| cte-bantam | MI0010094 | None | KB292771.1 | 319143 | 319243 | + | - |
| cte-mir-31 | MI0010059 | None | KB307198.1 | 86464 | 86564 | - | - |
| cte-mir-34 | MI0010060 | None | KB292771.1 | 443325 | 443425 | - | - |
| cte-mir-33 | MI0010096 | None | KB311953.1 | 237747 | 237847 | - | - |
| cte-mir-317 | MI0010086 | None | KB292771.1 | 444003 | 444103 | - | - |
| cte-mir-242 | MI0010216 | None | KB308011.1 | 18491 | 18597 | - | - |
| cte-mir-193 | MI0010077 | None | KB293638.1 | 175285 | 175370 | - | - |
| cte-mir-375 | MI0010088 | None | KB301364.1 | 184566 | 184665 | - | - |
| cte-mir-137 | MI0010071 | None | KB293809.1 | 173740 | 173840 | + | - |
| cte-mir-315 | MI0010085 | None | KB308897.1 | 128163 | 128263 | - | - |
| cte-mir-12 | MI0010056 | None | KB297336.1 | 33822 | 33922 | - | - |
| cte-mir-750 | MI0010091 | None | KB311954.1 | 14354 | 14452 | + | - |
| cte-mir-2001 | MI0010234 | None | KB302014.1 | 188007 | 188083 | + | - |
| cte-mir-1992 | MI0010229 | None | KB297182.1 | 201921 | 201997 | + | - |
| cte-mir-278 | MI0010082 | None | KB302014.1 | 103167 | 103267 | + | - |
| cte-mir-281 | MI0010084 | None | KB310891.1 | 24429 | 24530 | + | - |
| cte-mir-1175 | MI0010093 | None | KB311954.1 | 15440 | 15526 | + | - |
| cte-mir-96 | MI0010067 | None | KB296765.1 | 4320 | 4409 | + | - |
| cte-mir-67 | MI0010211 | None | KB310036.1 | 25467 | 25543 | + | - |
| cte-mir-124 | MI0010098 | None | KB295394.1 | 154711 | 154811 | + | - |
| cte-mir-71 | MI0010061 | None | KB312122.1 | 9913 | 10013 | + | - |
| cte-mir-2a | MI0010047 | None | KB312122.1 | 10534 | 10634 | + | - |
| cte-mir-2b | MI0010048 | None | KB312122.1 | 10029 | 10129 | + | - |
| hsa-mir-184 | MI0000481 | 1603 | chr15 | 79209788 | 79209871 | + | High |
| hsa-mir-210 | MI0000286 | 423 | chr11 | 568089 | 568198 | - | High |
| hsa-mir-31 | MI0000089 | 2296 | chr9 | 21512115 | 21512185 | - | High |
| hsa-mir-375 | MI0000783 | 1004 | chr2 | 219001645 | 219001708 | - | High |
| hsa-mir-137 | MI0000454 | 1706 | chr1 | 98046070 | 98046171 | - | High |
| hsa-mir-22 | MI0000078 | 2726 | chr17 | 1713903 | 1713987 | - | High |
| hsa-mir-96 | MI0000098 | 613 | chr7 | 129774692 | 129774769 | - | High |